Experiment 1: Biological Databases with Reference to Expasy and NCBI
Aim of the Experiment:
To explore and utilize various biological databases available on the World Wide Web, with a focus on Expasy and NCBI.
Objective:
1) To understand the structure and function of biological databases.
2) To navigate and retrieve biological data from Expasy and NCBI.
3) To use tools provided by these databases for analyzing biological information.
Procedure:
1. Open a web browser and access the required database by typing its URL (National Center for Biotechnology Information (nih.gov).
2. Navigate through the database to explore different categories and types of information available.
3. Use the provided tools to analyze biological data such as sequences or protein structures.
4. Save the retrieved information and analysis output into a designated folder for future reference.
A. Expasy (Expert Protein Analysis System):
1) Visit Expasy by typing the URL [www.expasy.org](http://www.expasy.org), a proteomic server maintained by the Swiss Institute of Bioinformatics.
2) On the left-side navigation column, explore the various categories like proteomics, genomics, phylogeny, and systems biology. Each category is further divided into Databases and Tools.
3) Use the query search tool on the home page to search for biological information. Narrow down search results using the drop-down menu, which categorizes data across multiple databases within Expasy.
Results:
1) Successfully accessed and navigated the Expasy database.
2) Retrieved biological data, including protein sequences, using search tools.
3) Analyzed the data using tools available on the Expasy platform.
4) Saved the output into a separate folder for further analysis.
Gallus gallus isolate bGalGal1 chromosome 1, bGalGal1.mat.broiler.GRCg7b, whole genome shotgun sequence
NCBI Reference Sequence: NC_052532.1
>NC_052532.1:35550009-35553725 Gallus gallus isolate bGalGal1 chromosome 1, bGalGal1.mat.broiler.GRCg7b, whole genome shotgun sequence GCAGTCCCGCTGTGTGTACGACACTGGCAACATGAGGTCTTTGCTAATCTTGGTGCTTTGCTTCCTGCCC CTGGCTGCTCTGGGGAAAGTCTTTGGACGATGTGAGCTGGCAGCGGCTATGAAGCGTCACGGACTTGATA ACTATCGGGGATACAGCCTGGGAAACTGTAAGTCTGTATTCTCATGATTTCCAGGGAGCACATGGGGTGG GAATTTCCATTTAACATGCTTCTTTAAAGTGAGCAGGTCTGCGTGATGTTGGAATGTAGATACTAAGAAG CCATCAGGTTAGTCCATCTCTGCTTGCACAGACTGCAGGTATTTTCTACAGATTTTCCCTCTGCCAGTCC TTTCCCTATCGTTCTTCCTCAGCTGAACTGAGATGTTGTCATCGGAAAGGTTTCCCAGAAGCAGCCTGTC CCATCCTACCTCCTCAGATCCTAAGCGCCCTGGTTTTACTTGCTTCAATTCCTCTGCAGATGTCCCCAAG GCTGTGGAGCAAGCAGGAGCAGAGTGCGGAGCCACGCTGGGCAGAGACACTGGTGTCAGGCTGGCTTGGT GGGCACTGCTACAAGGAGTAGTGGGGGAGAAGAGACGCTGAGCGTGCTGATGTGGGAAGGTCAGCCAGAA AGAAAGTGGGCTGAGAGGGGATCATAGAAACAAGGAGTGAGGGGCCACTTGAAAGCTTCTTTCCTCTGGT GGGCACTGACAACAGATTATTGTTAAACCAATTTCCTTTGAGGGAAGCATGCGTGCATTCTGTTCCCAGA TCTGGAGAGCAATCCATGTCATGTTCACAGCTGAAACAGAAATCACTATCCCCATCCCTCCTCCTTCCTG CTGCCCTGACACGGATGCAGCAGCATGTAAATAGGGCAAAATGAGGCCATCACAATGAGGCCACATAAAG TTTGAGCAGCTAAAATAACCCTCATTAAGGTGAGCAGGTACTGATGCAGAAAGAACGTCCAAGGAGCGTG CCTGGCAGCAGAAGCAATATGAACAGCCCTGTTTGGATGCATCTGCACCGCTTGCCAAAAGCACCACCTG TGAGACCGTACTGGGGCTGCCCAAAGCTTCCAAGAGTAGTAGGAGCTGTGCTGCAGAGCACAGCCTGCCC GCCAGCATCCTGAGGCATGATCTGTGTGTCTGTATATAGGGAGAAATGCACAAAAGCACGCTGGAATTTA TTTCTAAGGGTAGAAATCCCGTGCCAGGTTTACTAAGGATGTTTTGAAGTTAAGACACGTTGCACGTGTT TTTCACTCTTGGTTGGATTGGAAAAATGGTGTGCTCCGGACAGAGTCATCTTCCAATTGAGAGAAGAGAT GGAGAGTGCATCTTCATAAATAAGTCAGATACAGATTTAAAATAATAATCTTTGAGGGTTTTGTTTTCTT TTGAATGGAACTTCAACAGGGGTGTGTGCCGCAAAATTCGAGAGTAACTTCAACACCCAGGCTACAAACC GTAACACCGATGGGAGTACCGACTACGGAATCCTACAGATCAACAGCCGCTGGTGGTGCAACGATGGCAG GACCCCAGGCTCCAGGAACCTGTGCAACATCCCGTGCTCAGGTGAGCTCAGTTTCTCAAGGCAACGAATG CCCTTCCATAATCCGTGTGCAAGTAGACGAGCAAAGGGTGGTTACAACCCTATCTTTAGAACAAAGCAGA ACAAAATTCAAACACACTCTTCTCATTTTCAAAAAGCAGATCTGCACTGTAGCCATGCACACGTGAGAGG AAAAAGTTATTCAGCGATAGGAACCGTGTTCCCCTGTCTACCCATCCGAATGTTTCTAGAGAAAAGAGGT TTCAGAGCAGCCATTTATTAATTAGCAGCAACACTACTCTCTGGAAAATTTTCTTTGAAGGTAGTAAAAG CTTGACCCTTGCAAAATATTGTCCCAAATGCCACTTTCCCATCCCACTAGTGAAGGGGAGGAGAGGTGAA CAGATTCGCAAATCCCCCTTGGTTAGATTAAGGTGAAACAACACTCATGGTCTGTAGATAAGAGGAAAAA TCATCATTTTTAATAGGAGATTTCTATGAAACAGTCATCCTATATGCATCAGCCCTCACACAATTATATC TACCTAAGTACTGTCTATTACTGTACTGTACAAGCACTGTACAGTACTGAACAGTTGGATCAGGTATTCT GGCAGCTGCACTGCCACACAACTTCAATAATGCATCCCTGCAATGCCTACTCATTTTGACAAGGACAAGA AATGCCTACACAGATAGCTAGGACCAACACATTTGAGGGAAAATAATCAGTAGGCAGAGTGAAAACGGGA CAGCAGCAGAGGTCAGAGTAACCATACTGTAACCGCAGGCTTTCTCATCAGCCTGTGTCCAGCATAGCAC AGGGCTTATGCTGCCATTCTCACATCCTGGATTTCAGTGAGGATTTCAGTGTTGATTTAAGTATGGGCGT TTAGACCAGTGCAATAACACTTTTGTCTTTCTAGAGCACAGCTGAGTGGATGGTTATCTGCCAAGAAAGA CAGTTAGTTACCATAGGCAAAACAGCTTGGCTGCAGATTAACCATAAAATGATGGCAGAAAGTAGTTTGC AGTCACACTAGTAGCCACATGCTGAATTCTAACTCTATCTTCCAAAGACAAATGGATGAAATAGAGCTTC CTCTTGCAGCCTGGATTATTCTGCATCACTTGTGGCTTTGCTTCACTGGGTTTACTCTGCTTGCATTCTG ATAGCTGGAAGTCGCTAGAGGAAAATTCTTTCATTTTCCTTAGAAAGAGAGGAACAGAGAAACTGCCACA CATCTCAGGGCTTCGTTCTTTACTATGAGAGTGGTGAGGTGCTGGCATAGGCTGCCCAGAGAGGTTGTAG ATGCTCCATCCCTGGAGGTGTTCAGGGCCAGGTTGGATGGGGCCCTGGGCAGCCTGGTCTAGCATTAAAT GGGGAGGTTGGTGGCCCTGCCCACAGCAGGGGTGCTGGAGCTTCATGATCCTTGGGGTCCCTTCCAACCC GAGCATTCTTTGACTCTATGATCCCTTACCAAAGACCAGATAGACACAATAAACATCCCAGAGATTAATA AGGATCTCTTGAGTAGTCAGGCTACAGAACGGGTATCTGGAAGCCCATGGTGGCTGCACGGCCGCTCCCA GGCTTCCCTTTCCCCAGGTCGTGGTGTATCACTTACTCTTCTCCCCCACGCTGTGTCTGTCCGTGTGTGC TGCACACACACCGGCACTGCTCTGCTCGTCCAGCACGTCGGCGTCTGGTTTAAGCAGACACCGTGTGGGC CCACGGGAGTGGGGAGCAAACCGGCCAACACCAACACGCACTGAAGTAAAAACACGACGTGACGTGTTTC CCGCTTCCTTTCTTAAGCCCTGCTGAGCTCAGACATAACAGCGAGCGTGAACTGCGCGAAGAAGATCGTC AGCGATGGAAACGGCATGAACGCGTGGTAGGTGGCGGGGGGTTCCCAGGAGAGCCCCCAGCGCGGACGGC AGCGCCGTCACTCACCGCTCCGTCTCCCTCCGCCCAGGGTCGCCTGGCGCAACCGCTGCAAGGGCACCGA CGTCCAGGCGTGGATCAGAGGCTGCCGGCTGTGAGGAGCTGCCGCGCCCGGCCCGCCCGCTGCACAGCCG GCCGCTTTGCGAGCGCGACGCTACCCGCTTGGCAGTTTTAAACGCATCCCTCATTAAAACGACTATACGC AAACGCC
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